carnitine to x-23654

Numerator Metabolite

Structure of carnitine
Metabolite Accession: GCST90199621
Name: carnitine
Hmdb Id: HMDB0000062
Super Pathway: NA
Sub Pathway: NA
Inchikey: PHIQHXFUZVPYII

Denominator Metabolite

Metabolite Accession: GCST90200601
Name: NA
Hmdb Id: NA
Super Pathway: NA
Sub Pathway: NA
Inchikey: NA

Associated Genomic Regions

Region: rs12208357

Click a 'Plot' button in the tables to the right to view a locus plot here.

Clumped rQTL variant

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SNP Summary

Chr:
6
Beta (Ratio):
-0.318
Position:
160543148
SE (Ratio):
0.033
Effect Allele:
T
Z-score (Ratio):
-9.520
Reference Allele:
C
-log10(P):
-47.803
MAF:
0.069
Beta (Num):
-0.104
Novel Locus:
No
SE (Num):
0.030
Beta (Den):
0.214
SE (Den):
0.029
No CNV overlap
rQTL cluster:
98
Reaction Distance:
NA
Closest Genes:
SLC22A1 IGF2R SLC22A2 MAS1 SLC22A3

LLM Analysis

Not available.

Downloads

Download the full rQTL summary statistics file for this metabolite ratio. Data contains the loci listed here. For each SNP (chromosome, effect_allele, reference_allele, pos_name, position) these columns contain the summary statistics of the ratio (beta, pgain, pval, se, z), the numerator metabolite (beta_1, pval_1, n_iids_1, effect_allele_frequency_1, se_1, z_1) and the denominator metabolite (beta_2, pval_2, n_iids_2, effect_allele_frequency_2, se_2, z_2)

Download rQTL Data