indolepropionate to x-21821

Numerator Metabolite

Structure of indolepropionate
Metabolite Accession: GCST90199686
Name: indolepropionate
Hmdb Id: HMDB0002302
Super Pathway: NA
Sub Pathway: NA
Inchikey: GOLXRNDWAUTYKT

Denominator Metabolite

Metabolite Accession: GCST90200589
Name: NA
Hmdb Id: NA
Super Pathway: NA
Sub Pathway: NA
Inchikey: NA

Associated Genomic Regions

Region: rs34927101

Click a 'Plot' button in the tables to the right to view a locus plot here.

Clumped rQTL variant

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SNP Summary

Chr:
16
Beta (Ratio):
0.702
Position:
20444695
SE (Ratio):
0.047
Effect Allele:
T
Z-score (Ratio):
14.937
Reference Allele:
C
-log10(P):
-114.498
MAF:
0.018
Beta (Num):
0.556
Novel Locus:
No
SE (Num):
0.058
Beta (Den):
-0.146
SE (Den):
0.059
No CNV overlap
rQTL cluster:
200
Reaction Distance:
NA
Closest Genes:
ACSM5 ACSM2A PDILT AC137056.1 UMOD

Region: rs189297030

Click a 'Plot' button in the tables to the right to view a locus plot here.

Clumped rQTL variant

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SNP Summary

Chr:
16
Beta (Ratio):
-0.416
Position:
20477526
SE (Ratio):
0.050
Effect Allele:
G
Z-score (Ratio):
-8.365
Reference Allele:
C
-log10(P):
-37.350
MAF:
0.016
Beta (Num):
-0.312
Novel Locus:
No
SE (Num):
0.062
Beta (Den):
0.104
SE (Den):
0.062
No CNV overlap
rQTL cluster:
30
Reaction Distance:
NA
Closest Genes:
ACSM2A AC137056.1 ACSM5 PDILT ACSM2B

LLM Analysis

Not available.

Downloads

Download the full rQTL summary statistics file for this metabolite ratio. Data contains the loci listed here. For each SNP (chromosome, effect_allele, reference_allele, pos_name, position) these columns contain the summary statistics of the ratio (beta, pgain, pval, se, z), the numerator metabolite (beta_1, pval_1, n_iids_1, effect_allele_frequency_1, se_1, z_1) and the denominator metabolite (beta_2, pval_2, n_iids_2, effect_allele_frequency_2, se_2, z_2)

Download rQTL Data