5-dodecenoate (12:1n7) to palmitoylcarnitine (c16)

Numerator Metabolite

Structure of 5-dodecenoate (12:1n7)
Metabolite Accession: GCST90199723
Name: 5-dodecenoate (12:1n7)
Hmdb Id: HMDB0000529
Super Pathway: NA
Sub Pathway: NA
Inchikey: IJBFSOLHRKELLR

Denominator Metabolite

Structure of palmitoylcarnitine (c16)
Metabolite Accession: GCST90199666
Name: palmitoylcarnitine (c16)
Hmdb Id: HMDB0000222
Super Pathway: NA
Sub Pathway: NA
Inchikey: XOMRRQXKHMYMOC

Associated Genomic Regions

Region: rs603424

Click a 'Plot' button in the tables to the right to view a locus plot here.

Clumped rQTL variant

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SNP Summary

Chr:
10
Beta (Ratio):
-0.166
Position:
102075479
SE (Ratio):
0.020
Effect Allele:
A
Z-score (Ratio):
-8.396
Reference Allele:
G
-log10(P):
-37.615
MAF:
0.176
Beta (Num):
-0.112
Novel Locus:
Yes ✔️
SE (Num):
0.019
Beta (Den):
0.053
SE (Den):
0.020
No CNV overlap
rQTL cluster:
67
Reaction Distance:
NA
Closest Genes:
PKD2L1 BLOC1S2 SCD CWF19L1 CHUK

LLM Analysis

Numerator Metabolite Explanation:

Fatty acid biosynthesis/metabolism.4[1], 5[2], 6[3]

Denominator Metabolite Explanation:

Fatty acid metabolism/beta-oxidation.7[1], 8[2], 9[3], 10[4]

Ratio Explanation:

The ratio reflects Stearoyl-CoA Desaturase (SCD) activity, where SCD-mediated synthesis of monounsaturated fatty acids may influence the pool of saturated fatty acylcarnitines like palmitoylcarnitine.

Ratio Evidence:

metabolites related through biology

Gene Ratio Phenotype Relationship:

Reduced SCD activity is associated with lower levels of monounsaturated fatty acids and potentially altered levels of saturated acylcarnitines, which has been linked to a decreased risk of myocardial infarction, hypertension, and dyslipidemia.11[1], 12[2], 13[3], 14[4]

Phenotype Driver:

Gene-centric:SCD

Downloads

Download the full rQTL summary statistics file for this metabolite ratio. Data contains the loci listed here. For each SNP (chromosome, effect_allele, reference_allele, pos_name, position) these columns contain the summary statistics of the ratio (beta, pgain, pval, se, z), the numerator metabolite (beta_1, pval_1, n_iids_1, effect_allele_frequency_1, se_1, z_1) and the denominator metabolite (beta_2, pval_2, n_iids_2, effect_allele_frequency_2, se_2, z_2)

Download rQTL Data