n6-carbamoylthreonyladenosine to x-25371

Numerator Metabolite

Structure of n6-carbamoylthreonyladenosine
Metabolite Accession: GCST90199762
Name: n6-carbamoylthreonyladenosine
Hmdb Id: HMDB0041623
Super Pathway: NA
Sub Pathway: NA
Inchikey: GYCVHQYQICRFAX

Denominator Metabolite

Metabolite Accession: GCST90200656
Name: NA
Hmdb Id: NA
Super Pathway: NA
Sub Pathway: NA
Inchikey: NA

Associated Genomic Regions

Region: rs1165196

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Clumped rQTL variant

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SNP Summary

Chr:
6
Beta (Ratio):
-0.294
Position:
25813150
SE (Ratio):
0.015
Effect Allele:
G
Z-score (Ratio):
-19.333
Reference Allele:
A
-log10(P):
-190.070
MAF:
0.445
Beta (Num):
-0.048
Novel Locus:
No
SE (Num):
0.014
Beta (Den):
0.246
SE (Den):
0.015
No CNV overlap
rQTL cluster:
111
Reaction Distance:
NA
Closest Genes:
SLC17A1 SLC17A3 SLC17A4 HIST1H2BA HIST1H2AA

Region: rs66975207

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Clumped rQTL variant

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SNP Summary

Chr:
6
Beta (Ratio):
0.243
Position:
26942146
SE (Ratio):
0.027
Effect Allele:
C
Z-score (Ratio):
9.073
Reference Allele:
A
-log10(P):
-43.600
MAF:
0.087
Beta (Num):
0.141
Novel Locus:
Yes ✔️
SE (Num):
0.025
Beta (Den):
-0.103
SE (Den):
0.027
No CNV overlap
rQTL cluster:
110
Reaction Distance:
NA
Closest Genes:
HIST1H2BJ HIST1H2AG HIST1H2BK HIST1H4I HIST1H2AH

Region: rs35001169

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Clumped rQTL variant

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SNP Summary

Chr:
6
Beta (Ratio):
0.220
Position:
28187632
SE (Ratio):
0.026
Effect Allele:
G
Z-score (Ratio):
8.430
Reference Allele:
T
-log10(P):
-37.900
MAF:
0.092
Beta (Num):
0.127
Novel Locus:
Yes ✔️
SE (Num):
0.024
Beta (Den):
-0.093
SE (Den):
0.026
No CNV overlap
rQTL cluster:
110
Reaction Distance:
NA
Closest Genes:
ZSCAN9 ZKSCAN4 NKAPL ZKSCAN8 PGBD1

Region: rs3749971

Click a 'Plot' button in the tables to the right to view a locus plot here.

Clumped rQTL variant

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SNP Summary

Chr:
6
Beta (Ratio):
0.198
Position:
29342775
SE (Ratio):
0.025
Effect Allele:
A
Z-score (Ratio):
7.843
Reference Allele:
G
-log10(P):
-33.057
MAF:
0.100
Beta (Num):
0.124
Novel Locus:
Yes ✔️
SE (Num):
0.023
Beta (Den):
-0.074
SE (Den):
0.025
No CNV overlap
rQTL cluster:
110
Reaction Distance:
NA
Closest Genes:
OR12D3 OR5V1 OR12D2 OR11A1 OR10C1

LLM Analysis

Not available.

Downloads

Download the full rQTL summary statistics file for this metabolite ratio. Data contains the loci listed here. For each SNP (chromosome, effect_allele, reference_allele, pos_name, position) these columns contain the summary statistics of the ratio (beta, pgain, pval, se, z), the numerator metabolite (beta_1, pval_1, n_iids_1, effect_allele_frequency_1, se_1, z_1) and the denominator metabolite (beta_2, pval_2, n_iids_2, effect_allele_frequency_2, se_2, z_2)

Download rQTL Data