indole-3-carboxylate to x-24588

Numerator Metabolite

Structure of indole-3-carboxylate
Metabolite Accession: GCST90199877
Name: indole-3-carboxylate
Hmdb Id: HMDB0003320
Super Pathway: NA
Sub Pathway: NA
Inchikey: KMAKOBLIOCQGJP

Denominator Metabolite

Metabolite Accession: GCST90200649
Name: NA
Hmdb Id: NA
Super Pathway: NA
Sub Pathway: NA
Inchikey: NA

Associated Genomic Regions

Region: rs72551330

Click a 'Plot' button in the tables to the right to view a locus plot here.

Clumped rQTL variant

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SNP Summary

Chr:
2
Beta (Ratio):
0.908
Position:
234580678
SE (Ratio):
0.096
Effect Allele:
C
Z-score (Ratio):
9.500
Reference Allele:
T
-log10(P):
-47.608
MAF:
0.017
Beta (Num):
0.515
Novel Locus:
No
SE (Num):
0.074
Beta (Den):
-0.393
SE (Den):
0.062
No CNV overlap
rQTL cluster:
136
Reaction Distance:
NA
Closest Genes:
UGT1A10 UGT1A8 UGT1A9 UGT1A7 UGT1A6

LLM Analysis

Not available.

Downloads

Download the full rQTL summary statistics file for this metabolite ratio. Data contains the loci listed here. For each SNP (chromosome, effect_allele, reference_allele, pos_name, position) these columns contain the summary statistics of the ratio (beta, pgain, pval, se, z), the numerator metabolite (beta_1, pval_1, n_iids_1, effect_allele_frequency_1, se_1, z_1) and the denominator metabolite (beta_2, pval_2, n_iids_2, effect_allele_frequency_2, se_2, z_2)

Download rQTL Data