3-hydroxyhexanoate to x-21829

Numerator Metabolite

Structure of 3-hydroxyhexanoate
Metabolite Accession: GCST90200012
Name: 3-hydroxyhexanoate
Hmdb Id: HMDB0061652,HMDB0010718
Super Pathway: NA
Sub Pathway: NA
Inchikey: HPMGFDVTYHWBAG

Denominator Metabolite

Metabolite Accession: GCST90200585
Name: NA
Hmdb Id: NA
Super Pathway: NA
Sub Pathway: NA
Inchikey: NA

Associated Genomic Regions

Region: rs28415528

Click a 'Plot' button in the tables to the right to view a locus plot here.

Clumped rQTL variant

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SNP Summary

Chr:
1
Beta (Ratio):
-0.140
Position:
151879761
SE (Ratio):
0.015
Effect Allele:
A
Z-score (Ratio):
-9.529
Reference Allele:
G
-log10(P):
-47.891
MAF:
0.318
Beta (Num):
-0.078
Novel Locus:
Yes ✔️
SE (Num):
0.016
Beta (Den):
0.062
SE (Den):
0.016
No CNV overlap
rQTL cluster:
155
Reaction Distance:
NA
Closest Genes:
THEM4 THEM5 C2CD4D RORC S100A10

Region: rs7130679

Click a 'Plot' button in the tables to the right to view a locus plot here.

Clumped rQTL variant

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SNP Summary

Chr:
11
Beta (Ratio):
-0.116
Position:
67385125
SE (Ratio):
0.014
Effect Allele:
G
Z-score (Ratio):
-8.505
Reference Allele:
A
-log10(P):
-38.548
MAF:
0.416
Beta (Num):
-0.046
Novel Locus:
Yes ✔️
SE (Num):
0.015
Beta (Den):
0.071
SE (Den):
0.015
No CNV overlap
rQTL cluster:
58
Reaction Distance:
NA
Closest Genes:
NDUFV1 NUDT8 C11orf72 TBX10 ACY3

LLM Analysis

Not available.

Downloads

Download the full rQTL summary statistics file for this metabolite ratio. Data contains the loci listed here. For each SNP (chromosome, effect_allele, reference_allele, pos_name, position) these columns contain the summary statistics of the ratio (beta, pgain, pval, se, z), the numerator metabolite (beta_1, pval_1, n_iids_1, effect_allele_frequency_1, se_1, z_1) and the denominator metabolite (beta_2, pval_2, n_iids_2, effect_allele_frequency_2, se_2, z_2)

Download rQTL Data