oleate/vaccenate (18:1) to margarate (17:0)

Numerator Metabolite

Structure of oleate/vaccenate (18:1)
Metabolite Accession: GCST90200042
Name: oleate/vaccenate (18:1)
Hmdb Id: HMDB0003231,HMDB0000573,HMDB0240219,HMDB0000207
Super Pathway: NA
Sub Pathway: NA
Inchikey: UWHZIFQPPBDJPM

Denominator Metabolite

Structure of margarate (17:0)
Metabolite Accession: GCST90200459
Name: margarate (17:0)
Hmdb Id: HMDB0002259
Super Pathway: NA
Sub Pathway: NA
Inchikey: KEMQGTRYUADPNZ

Associated Genomic Regions

Region: rs603424

Click a 'Plot' button in the tables to the right to view a locus plot here.

Clumped rQTL variant

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SNP Summary

Chr:
10
Beta (Ratio):
-0.089
Position:
102075479
SE (Ratio):
0.010
Effect Allele:
A
Z-score (Ratio):
-8.794
Reference Allele:
G
-log10(P):
-41.083
MAF:
0.176
Beta (Num):
-0.013
Novel Locus:
Yes ✔️
SE (Num):
0.020
Beta (Den):
0.076
SE (Den):
0.020
No CNV overlap
rQTL cluster:
67
Reaction Distance:
NA
Closest Genes:
PKD2L1 BLOC1S2 SCD CWF19L1 CHUK

LLM Analysis

Numerator Metabolite Explanation:

Fatty acid biosynthesis.3[1], 4[2], 5[3]

Denominator Metabolite Explanation:

Odd-chain fatty acid biosynthesis.6[1], 7[2]

Ratio Explanation:

The ratio reflects SCD activity, which regulates the balance between monounsaturated fatty acids (oleate/vaccenate) and saturated fatty acids like margarate, impacting lipid composition.8[1], 9[2]

Ratio Evidence:

metabolites not in a pathway but enzyme catalyzes one metabolite

Gene Ratio Phenotype Relationship:

Altered SCD activity, indicated by this ratio, is linked to dyslipidemia and cardiovascular diseases.10[1], 11[2], 12[3] Increased SCD activity can promote the development of atherosclerosis, myocardial infarction, and other associated heart conditions.13[4], 14[5], 15[6]

Phenotype Driver:

Gene-centric:SCD

Downloads

Download the full rQTL summary statistics file for this metabolite ratio. Data contains the loci listed here. For each SNP (chromosome, effect_allele, reference_allele, pos_name, position) these columns contain the summary statistics of the ratio (beta, pgain, pval, se, z), the numerator metabolite (beta_1, pval_1, n_iids_1, effect_allele_frequency_1, se_1, z_1) and the denominator metabolite (beta_2, pval_2, n_iids_2, effect_allele_frequency_2, se_2, z_2)

Download rQTL Data