5-hydroxyindole sulfate to x-12216

Numerator Metabolite

Metabolite Accession: GCST90200050
Name: 5-hydroxyindole sulfate
Hmdb Id: HMDB0341278
Super Pathway: NA
Sub Pathway: NA
Inchikey: NA

Denominator Metabolite

Metabolite Accession: GCST90200483
Name: NA
Hmdb Id: NA
Super Pathway: NA
Sub Pathway: NA
Inchikey: NA

Associated Genomic Regions

Region: rs56113850

Click a 'Plot' button in the tables to the right to view a locus plot here.

Clumped rQTL variant

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SNP Summary

Chr:
19
Beta (Ratio):
0.218
Position:
41353107
SE (Ratio):
0.019
Effect Allele:
T
Z-score (Ratio):
11.555
Reference Allele:
C
-log10(P):
-69.440
MAF:
0.434
Beta (Num):
0.088
Novel Locus:
No
SE (Num):
0.018
Beta (Den):
-0.130
SE (Den):
0.015
No CNV overlap
rQTL cluster:
244
Reaction Distance:
NA
Closest Genes:
CTC-490E21.12 CYP2A6 CYP2A7 EGLN2 RAB4B-EGLN2

LLM Analysis

Not available.

Downloads

Download the full rQTL summary statistics file for this metabolite ratio. Data contains the loci listed here. For each SNP (chromosome, effect_allele, reference_allele, pos_name, position) these columns contain the summary statistics of the ratio (beta, pgain, pval, se, z), the numerator metabolite (beta_1, pval_1, n_iids_1, effect_allele_frequency_1, se_1, z_1) and the denominator metabolite (beta_2, pval_2, n_iids_2, effect_allele_frequency_2, se_2, z_2)

Download rQTL Data