1-oleoyl-2-docosahexaenoyl-gpc (18:1/22:6)* to 1-(1-enyl-palmitoyl)-2-linoleoyl-gpc (p-16:0/18:2)*

Numerator Metabolite

Structure of 1-oleoyl-2-docosahexaenoyl-gpc (18:1/22:6)*
Metabolite Accession: GCST90200081
Name: 1-oleoyl-2-docosahexaenoyl-gpc (18:1/22:6)*
Hmdb Id: HMDB0008123
Super Pathway: NA
Sub Pathway: NA
Inchikey: FPEVDFOXMCHLKL

Denominator Metabolite

Structure of 1-(1-enyl-palmitoyl)-2-linoleoyl-gpc (p-16:0/18:2)*
Metabolite Accession: GCST90200060
Name: 1-(1-enyl-palmitoyl)-2-linoleoyl-gpc (p-16:0/18:2)*
Hmdb Id: HMDB0011211
Super Pathway: NA
Sub Pathway: NA
Inchikey: QLEHHUPUHJPURI

Associated Genomic Regions

Region: rs964184

Click a 'Plot' button in the tables to the right to view a locus plot here.

Clumped rQTL variant

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SNP Summary

Chr:
11
Beta (Ratio):
0.236
Position:
116648917
SE (Ratio):
0.030
Effect Allele:
G
Z-score (Ratio):
7.879
Reference Allele:
C
-log10(P):
-33.349
MAF:
0.131
Beta (Num):
0.120
Novel Locus:
Yes ✔️
SE (Num):
0.022
Beta (Den):
-0.117
SE (Den):
0.023
No CNV overlap
rQTL cluster:
248
Reaction Distance:
NA
Closest Genes:
ZNF259 BUD13 APOA5 APOA4 APOC3

LLM Analysis

Numerator Metabolite Explanation:

Glycerophospholipid metabolism, phosphatidylcholine biosynthesis.3[1]

Denominator Metabolite Explanation:

Glycerophospholipid metabolism, plasmalogen biosynthesis.4[1]

Ratio Explanation:

This ratio likely reflects lipoprotein composition, where APOA5 variants alter the balance between phosphatidylcholine and plasmalogen species within triglyceride-rich lipoproteins.5[1], 6[2]

Ratio Evidence:

metabolites related through biology

Gene Ratio Phenotype Relationship:

Genetic variants in the APOA1/C3/A4/A5 gene cluster alter lipoprotein metabolism, causing dyslipidemia like hypercholesterolemia and high triglycerides.7[1], 8[2], 9[3] This altered lipid transport, reflected in the phospholipid ratio, drives the development of associated cardiovascular phenotypes like coronary atherosclerosis and myocardial infarction.7[4]

Phenotype Driver:

Gene-centric:APOA5

Downloads

Download the full rQTL summary statistics file for this metabolite ratio. Data contains the loci listed here. For each SNP (chromosome, effect_allele, reference_allele, pos_name, position) these columns contain the summary statistics of the ratio (beta, pgain, pval, se, z), the numerator metabolite (beta_1, pval_1, n_iids_1, effect_allele_frequency_1, se_1, z_1) and the denominator metabolite (beta_2, pval_2, n_iids_2, effect_allele_frequency_2, se_2, z_2)

Download rQTL Data