1-(1-enyl-palmitoyl)-2-palmitoyl-gpc (p-16:0/16:0)* to glycosyl-n-behenoyl-sphingadienine (d18:2/22:0)*

Numerator Metabolite

Structure of 1-(1-enyl-palmitoyl)-2-palmitoyl-gpc (p-16:0/16:0)*
Metabolite Accession: GCST90200083
Name: 1-(1-enyl-palmitoyl)-2-palmitoyl-gpc (p-16:0/16:0)*
Hmdb Id: HMDB0011206
Super Pathway: NA
Sub Pathway: NA
Inchikey: PEWXKAOBUSBJLD

Denominator Metabolite

Metabolite Accession: GCST90200105
Name: glycosyl-n-behenoyl-sphingadienine (d18:2/22:0)*
Hmdb Id: NA
Super Pathway: NA
Sub Pathway: NA
Inchikey: NA

Associated Genomic Regions

Region: rs72719193

Click a 'Plot' button in the tables to the right to view a locus plot here.

Clumped rQTL variant

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SNP Summary

Chr:
14
Beta (Ratio):
-0.361
Position:
67969108
SE (Ratio):
0.015
Effect Allele:
A
Z-score (Ratio):
-24.520
Reference Allele:
G
-log10(P):
-304.048
MAF:
0.477
Beta (Num):
-0.355
Novel Locus:
No
SE (Num):
0.015
Beta (Den):
0.006
SE (Den):
0.015
No CNV overlap
rQTL cluster:
46
Reaction Distance:
NA
Closest Genes:
TMEM229B PLEKHH1 PIGH PLEK2 EIF2S1

LLM Analysis

Numerator Metabolite Explanation:

Glycerophospholipid metabolism, Ether lipid metabolism.4[1], 5[2]

Denominator Metabolite Explanation:

Glycosphingolipid metabolism.6[1], 7[2]

Ratio Explanation:

The ratio reflects the balance between ether phospholipid and glycosphingolipid pathways. ATP10D's role in glucosylceramide transport suggests it may influence this balance.8[1]

Ratio Evidence:

metabolites not in a pathway but enzyme catalyzes one metabolite

Gene Ratio Phenotype Relationship:

No phenotype data is available, so a direct link between the ATP10D gene, the metabolite ratio, and a phenotype cannot be established.

Phenotype Driver:

none

Downloads

Download the full rQTL summary statistics file for this metabolite ratio. Data contains the loci listed here. For each SNP (chromosome, effect_allele, reference_allele, pos_name, position) these columns contain the summary statistics of the ratio (beta, pgain, pval, se, z), the numerator metabolite (beta_1, pval_1, n_iids_1, effect_allele_frequency_1, se_1, z_1) and the denominator metabolite (beta_2, pval_2, n_iids_2, effect_allele_frequency_2, se_2, z_2)

Download rQTL Data