hexadecadienoate (16:2n6) to margarate (17:0)

Numerator Metabolite

Structure of hexadecadienoate (16:2n6)
Metabolite Accession: GCST90200104
Name: hexadecadienoate (16:2n6)
Hmdb Id: HMDB0000477
Super Pathway: NA
Sub Pathway: NA
Inchikey: WPJGPAAPSBVXNU

Denominator Metabolite

Structure of margarate (17:0)
Metabolite Accession: GCST90200459
Name: margarate (17:0)
Hmdb Id: HMDB0002259
Super Pathway: NA
Sub Pathway: NA
Inchikey: KEMQGTRYUADPNZ

Associated Genomic Regions

Region: rs603424

Click a 'Plot' button in the tables to the right to view a locus plot here.

Clumped rQTL variant

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SNP Summary

Chr:
10
Beta (Ratio):
-0.143
Position:
102075479
SE (Ratio):
0.014
Effect Allele:
A
Z-score (Ratio):
-10.599
Reference Allele:
G
-log10(P):
-58.765
MAF:
0.176
Beta (Num):
-0.068
Novel Locus:
Yes ✔️
SE (Num):
0.019
Beta (Den):
0.076
SE (Den):
0.020
No CNV overlap
rQTL cluster:
67
Reaction Distance:
NA
Closest Genes:
PKD2L1 BLOC1S2 SCD CWF19L1 CHUK

LLM Analysis

Numerator Metabolite Explanation:

Fatty acid biosynthesis2[1], 3[2]

Denominator Metabolite Explanation:

Fatty acid biosynthesis4[1], 5[2]

Ratio Explanation:

The ratio reflects Stearoyl-CoA desaturase (SCD) activity, where higher levels may indicate increased conversion of saturated to monounsaturated fats.6[1], 1[2]

Ratio Evidence:

reaction where the ratio is shared through a pathway

Gene Ratio Phenotype Relationship:

SCD gene variants can alter enzyme activity, influencing fatty acid metabolism.7[1], 8[2] This dysregulation is linked to coronary atherosclerosis and cholelithiasis, potentially through effects on lipid profiles and inflammation.9[3], 10[4]

Phenotype Driver:

Gene-centric:SCD

Downloads

Download the full rQTL summary statistics file for this metabolite ratio. Data contains the loci listed here. For each SNP (chromosome, effect_allele, reference_allele, pos_name, position) these columns contain the summary statistics of the ratio (beta, pgain, pval, se, z), the numerator metabolite (beta_1, pval_1, n_iids_1, effect_allele_frequency_1, se_1, z_1) and the denominator metabolite (beta_2, pval_2, n_iids_2, effect_allele_frequency_2, se_2, z_2)

Download rQTL Data