3-formylindole to x-25109

Numerator Metabolite

Structure of 3-formylindole
Metabolite Accession: GCST90200184
Name: 3-formylindole
Hmdb Id: HMDB29737
Super Pathway: NA
Sub Pathway: NA
Inchikey: OLNJUISKUQQNIM

Denominator Metabolite

Metabolite Accession: GCST90200650
Name: NA
Hmdb Id: NA
Super Pathway: NA
Sub Pathway: NA
Inchikey: NA

Associated Genomic Regions

Region: rs11647808

Click a 'Plot' button in the tables to the right to view a locus plot here.

Clumped rQTL variant

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SNP Summary

Chr:
16
Beta (Ratio):
0.336
Position:
58770881
SE (Ratio):
0.038
Effect Allele:
A
Z-score (Ratio):
8.820
Reference Allele:
C
-log10(P):
-41.313
MAF:
0.079
Beta (Num):
0.178
Novel Locus:
No
SE (Num):
0.027
Beta (Den):
-0.158
SE (Den):
0.030
No CNV overlap
rQTL cluster:
25
Reaction Distance:
NA
Closest Genes:
GOT2 SLC38A7 CNOT1 SETD6 NDRG4

LLM Analysis

Not available.

Downloads

Download the full rQTL summary statistics file for this metabolite ratio. Data contains the loci listed here. For each SNP (chromosome, effect_allele, reference_allele, pos_name, position) these columns contain the summary statistics of the ratio (beta, pgain, pval, se, z), the numerator metabolite (beta_1, pval_1, n_iids_1, effect_allele_frequency_1, se_1, z_1) and the denominator metabolite (beta_2, pval_2, n_iids_2, effect_allele_frequency_2, se_2, z_2)

Download rQTL Data