tetradecadienedioate (c14:2-dc)* to myristate (14:0)

Numerator Metabolite

Metabolite Accession: GCST90200239
Name: tetradecadienedioate (c14:2-dc)*
Hmdb Id: NA
Super Pathway: NA
Sub Pathway: NA
Inchikey: NA

Denominator Metabolite

Structure of myristate (14:0)
Metabolite Accession: GCST90200414
Name: myristate (14:0)
Hmdb Id: HMDB0000806
Super Pathway: NA
Sub Pathway: NA
Inchikey: TUNFSRHWOTWDNC

Associated Genomic Regions

Region: rs603424

Click a 'Plot' button in the tables to the right to view a locus plot here.

Clumped rQTL variant

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SNP Summary

Chr:
10
Beta (Ratio):
-0.221
Position:
102075479
SE (Ratio):
0.020
Effect Allele:
A
Z-score (Ratio):
-10.827
Reference Allele:
G
-log10(P):
-61.232
MAF:
0.175
Beta (Num):
-0.169
Novel Locus:
No
SE (Num):
0.020
Beta (Den):
0.052
SE (Den):
0.019
No CNV overlap
rQTL cluster:
67
Reaction Distance:
NA
Closest Genes:
PKD2L1 BLOC1S2 SCD CWF19L1 CHUK

LLM Analysis

Numerator Metabolite Explanation:

Dicarboxylic fatty acid metabolism

Denominator Metabolite Explanation:

Fatty acid biosynthesis/metabolism

Ratio Explanation:

This ratio reflects the activity of desaturase enzymes, like SCD, on myristate, a saturated fatty acid, and its subsequent metabolism into a dicarboxylic fatty acid.

Ratio Evidence:

reaction where the ratio is shared through a pathway

Gene Ratio Phenotype Relationship:

Genetic variation near the SCD gene likely alters its function, impacting the balance of fatty acids, as seen in the ratio.1[1], 3[2] This dysregulation of lipid metabolism is a known contributor to atherosclerosis, hypercholesterolemia, and myocardial infarction.3[3], 4[4]

Phenotype Driver:

Gene-centric:SCD

Downloads

Download the full rQTL summary statistics file for this metabolite ratio. Data contains the loci listed here. For each SNP (chromosome, effect_allele, reference_allele, pos_name, position) these columns contain the summary statistics of the ratio (beta, pgain, pval, se, z), the numerator metabolite (beta_1, pval_1, n_iids_1, effect_allele_frequency_1, se_1, z_1) and the denominator metabolite (beta_2, pval_2, n_iids_2, effect_allele_frequency_2, se_2, z_2)

Download rQTL Data