x-11470 to x-24494

Numerator Metabolite

Metabolite Accession: GCST90200470
Name: NA
Hmdb Id: NA
Super Pathway: NA
Sub Pathway: NA
Inchikey: NA

Denominator Metabolite

Metabolite Accession: GCST90200635
Name: NA
Hmdb Id: NA
Super Pathway: NA
Sub Pathway: NA
Inchikey: NA

Associated Genomic Regions

Region: rs115332425

Click a 'Plot' button in the tables to the right to view a locus plot here.

Clumped rQTL variant

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SNP Summary

Chr:
2
Beta (Ratio):
-1.097
Position:
31879296
SE (Ratio):
0.090
Effect Allele:
G
Z-score (Ratio):
-12.205
Reference Allele:
T
-log10(P):
-77.221
MAF:
0.015
Beta (Num):
-0.629
Novel Locus:
No
SE (Num):
0.061
Beta (Den):
0.468
SE (Den):
0.063
No CNV overlap
rQTL cluster:
150
Reaction Distance:
NA
Closest Genes:
MEMO1 DPY30 XDH EHD3 SPAST

Region: rs112881196

Click a 'Plot' button in the tables to the right to view a locus plot here.

Clumped rQTL variant

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Loading Denominator Plot...

SNP Summary

Chr:
2
Beta (Ratio):
-0.990
Position:
31982811
SE (Ratio):
0.062
Effect Allele:
G
Z-score (Ratio):
-16.038
Reference Allele:
C
-log10(P):
-131.614
MAF:
0.035
Beta (Num):
-0.568
Novel Locus:
No
SE (Num):
0.041
Beta (Den):
0.422
SE (Den):
0.044
No CNV overlap
rQTL cluster:
149
Reaction Distance:
NA
Closest Genes:
MEMO1 DPY30 SPAST XDH SLC30A6

LLM Analysis

Not available.

Downloads

Download the full rQTL summary statistics file for this metabolite ratio. Data contains the loci listed here. For each SNP (chromosome, effect_allele, reference_allele, pos_name, position) these columns contain the summary statistics of the ratio (beta, pgain, pval, se, z), the numerator metabolite (beta_1, pval_1, n_iids_1, effect_allele_frequency_1, se_1, z_1) and the denominator metabolite (beta_2, pval_2, n_iids_2, effect_allele_frequency_2, se_2, z_2)

Download rQTL Data