x-11444 to x-12844

Numerator Metabolite

Metabolite Accession: GCST90200474
Name: NA
Hmdb Id: NA
Super Pathway: NA
Sub Pathway: NA
Inchikey: NA

Denominator Metabolite

Metabolite Accession: GCST90200523
Name: NA
Hmdb Id: NA
Super Pathway: NA
Sub Pathway: NA
Inchikey: NA

Associated Genomic Regions

Region: rs113017476

Click a 'Plot' button in the tables to the right to view a locus plot here.

Clumped rQTL variant

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SNP Summary

Chr:
2
Beta (Ratio):
-0.750
Position:
31989359
SE (Ratio):
0.041
Effect Allele:
A
Z-score (Ratio):
-18.190
Reference Allele:
G
-log10(P):
-168.562
MAF:
0.035
Beta (Num):
-0.655
Novel Locus:
No
SE (Num):
0.039
Beta (Den):
0.095
SE (Den):
0.042
No CNV overlap
rQTL cluster:
149
Reaction Distance:
NA
Closest Genes:
MEMO1 DPY30 SPAST XDH SLC30A6

Region: rs28601761

Click a 'Plot' button in the tables to the right to view a locus plot here.

Clumped rQTL variant

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SNP Summary

Chr:
8
Beta (Ratio):
-0.138
Position:
126500031
SE (Ratio):
0.015
Effect Allele:
G
Z-score (Ratio):
-8.951
Reference Allele:
C
-log10(P):
-42.488
MAF:
0.423
Beta (Num):
-0.093
Novel Locus:
No
SE (Num):
0.015
Beta (Den):
0.045
SE (Den):
0.016
No CNV overlap
rQTL cluster:
83
Reaction Distance:
NA
Closest Genes:
TRIB1 NSMCE2 KIAA0196 SQLE ZNF572

LLM Analysis

Not available.

Downloads

Download the full rQTL summary statistics file for this metabolite ratio. Data contains the loci listed here. For each SNP (chromosome, effect_allele, reference_allele, pos_name, position) these columns contain the summary statistics of the ratio (beta, pgain, pval, se, z), the numerator metabolite (beta_1, pval_1, n_iids_1, effect_allele_frequency_1, se_1, z_1) and the denominator metabolite (beta_2, pval_2, n_iids_2, effect_allele_frequency_2, se_2, z_2)

Download rQTL Data