x-17690 to x-19141

Numerator Metabolite

Metabolite Accession: GCST90200555
Name: NA
Hmdb Id: NA
Super Pathway: NA
Sub Pathway: NA
Inchikey: NA

Denominator Metabolite

Metabolite Accession: GCST90200711
Name: NA
Hmdb Id: NA
Super Pathway: NA
Sub Pathway: NA
Inchikey: NA

Associated Genomic Regions

Region: rs2817188

Click a 'Plot' button in the tables to the right to view a locus plot here.

Clumped rQTL variant

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SNP Summary

Chr:
6
Beta (Ratio):
-0.526
Position:
25807603
SE (Ratio):
0.023
Effect Allele:
A
Z-score (Ratio):
-23.171
Reference Allele:
G
-log10(P):
-271.827
MAF:
0.428
Beta (Num):
-0.192
Novel Locus:
No
SE (Num):
0.017
Beta (Den):
0.334
SE (Den):
0.015
No CNV overlap
rQTL cluster:
111
Reaction Distance:
NA
Closest Genes:
SLC17A1 SLC17A3 SLC17A4 HIST1H2BA HIST1H2AA

Region: rs6904596

Click a 'Plot' button in the tables to the right to view a locus plot here.

Clumped rQTL variant

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SNP Summary

Chr:
6
Beta (Ratio):
0.316
Position:
27491299
SE (Ratio):
0.036
Effect Allele:
A
Z-score (Ratio):
8.684
Reference Allele:
G
-log10(P):
-40.108
MAF:
0.109
Beta (Num):
0.167
Novel Locus:
Yes ✔️
SE (Num):
0.027
Beta (Den):
-0.149
SE (Den):
0.025
No CNV overlap
rQTL cluster:
110
Reaction Distance:
NA
Closest Genes:
ZNF184 ZNF391 POM121L2 PRSS16 HIST1H2BL

LLM Analysis

Not available.

Downloads

Download the full rQTL summary statistics file for this metabolite ratio. Data contains the loci listed here. For each SNP (chromosome, effect_allele, reference_allele, pos_name, position) these columns contain the summary statistics of the ratio (beta, pgain, pval, se, z), the numerator metabolite (beta_1, pval_1, n_iids_1, effect_allele_frequency_1, se_1, z_1) and the denominator metabolite (beta_2, pval_2, n_iids_2, effect_allele_frequency_2, se_2, z_2)

Download rQTL Data