x-21319 to x-14939

Numerator Metabolite

Metabolite Accession: GCST90200564
Name: NA
Hmdb Id: NA
Super Pathway: NA
Sub Pathway: NA
Inchikey: NA

Denominator Metabolite

Metabolite Accession: GCST90200539
Name: NA
Hmdb Id: NA
Super Pathway: NA
Sub Pathway: NA
Inchikey: NA

Associated Genomic Regions

Region: rs12132488

Click a 'Plot' button in the tables to the right to view a locus plot here.

Clumped rQTL variant

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SNP Summary

Chr:
1
Beta (Ratio):
-0.191
Position:
47389613
SE (Ratio):
0.013
Effect Allele:
T
Z-score (Ratio):
-14.285
Reference Allele:
C
-log10(P):
-104.914
MAF:
0.127
Beta (Num):
0.103
Novel Locus:
No
SE (Num):
0.024
Beta (Den):
0.295
SE (Den):
0.023
No CNV overlap
rQTL cluster:
163
Reaction Distance:
NA
Closest Genes:
CYP4A11 CYP4X1 CYP4B1 CYP4Z1 EFCAB14

Region: rs28415528

Click a 'Plot' button in the tables to the right to view a locus plot here.

Clumped rQTL variant

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SNP Summary

Chr:
1
Beta (Ratio):
-0.085
Position:
151879761
SE (Ratio):
0.010
Effect Allele:
A
Z-score (Ratio):
-8.856
Reference Allele:
G
-log10(P):
-41.630
MAF:
0.317
Beta (Num):
-0.022
Novel Locus:
Yes ✔️
SE (Num):
0.017
Beta (Den):
0.063
SE (Den):
0.016
No CNV overlap
rQTL cluster:
155
Reaction Distance:
NA
Closest Genes:
THEM4 THEM5 C2CD4D RORC S100A10

Region: rs73530508

Click a 'Plot' button in the tables to the right to view a locus plot here.

Clumped rQTL variant

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SNP Summary

Chr:
16
Beta (Ratio):
-0.231
Position:
20552466
SE (Ratio):
0.022
Effect Allele:
G
Z-score (Ratio):
-10.683
Reference Allele:
A
-log10(P):
-59.666
MAF:
0.044
Beta (Num):
-0.264
Novel Locus:
No
SE (Num):
0.038
Beta (Den):
-0.034
SE (Den):
0.037
No CNV overlap
rQTL cluster:
30
Reaction Distance:
NA
Closest Genes:
ACSM2B AC137056.1 ACSM2A ACSM3 ACSM1

LLM Analysis

Not available.

Downloads

Download the full rQTL summary statistics file for this metabolite ratio. Data contains the loci listed here. For each SNP (chromosome, effect_allele, reference_allele, pos_name, position) these columns contain the summary statistics of the ratio (beta, pgain, pval, se, z), the numerator metabolite (beta_1, pval_1, n_iids_1, effect_allele_frequency_1, se_1, z_1) and the denominator metabolite (beta_2, pval_2, n_iids_2, effect_allele_frequency_2, se_2, z_2)

Download rQTL Data