x-21441 to pregnenediol sulfate (c21h34o5s)*

Numerator Metabolite

Metabolite Accession: GCST90200581
Name: NA
Hmdb Id: NA
Super Pathway: NA
Sub Pathway: NA
Inchikey: NA

Denominator Metabolite

Structure of pregnenediol sulfate (c21h34o5s)*
Metabolite Accession: GCST90199861
Name: pregnenediol sulfate (c21h34o5s)*
Hmdb Id: HMDB0000774
Super Pathway: NA
Sub Pathway: NA
Inchikey: DIJBBUIOWGGQOP

Associated Genomic Regions

Region: rs72838129

Click a 'Plot' button in the tables to the right to view a locus plot here.

Clumped rQTL variant

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SNP Summary

Chr:
10
Beta (Ratio):
-0.625
Position:
101604481
SE (Ratio):
0.032
Effect Allele:
C
Z-score (Ratio):
-19.733
Reference Allele:
T
-log10(P):
-197.911
MAF:
0.057
Beta (Num):
-0.597
Novel Locus:
No
SE (Num):
0.033
Beta (Den):
0.027
SE (Den):
0.028
No CNV overlap
rQTL cluster:
68
Reaction Distance:
NA
Closest Genes:
ABCC2 DNMBP CUTC COX15 ENTPD7

Region: rs2011425

Click a 'Plot' button in the tables to the right to view a locus plot here.

Clumped rQTL variant

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SNP Summary

Chr:
2
Beta (Ratio):
0.392
Position:
234627608
SE (Ratio):
0.027
Effect Allele:
G
Z-score (Ratio):
14.466
Reference Allele:
T
-log10(P):
-107.532
MAF:
0.081
Beta (Num):
0.362
Novel Locus:
No
SE (Num):
0.028
Beta (Den):
-0.030
SE (Den):
0.024
No CNV overlap
rQTL cluster:
136
Reaction Distance:
NA
Closest Genes:
UGT1A10 UGT1A5 UGT1A8 UGT1A6 UGT1A4

LLM Analysis

Not available.

Downloads

Download the full rQTL summary statistics file for this metabolite ratio. Data contains the loci listed here. For each SNP (chromosome, effect_allele, reference_allele, pos_name, position) these columns contain the summary statistics of the ratio (beta, pgain, pval, se, z), the numerator metabolite (beta_1, pval_1, n_iids_1, effect_allele_frequency_1, se_1, z_1) and the denominator metabolite (beta_2, pval_2, n_iids_2, effect_allele_frequency_2, se_2, z_2)

Download rQTL Data