glycolithocholate to x-22520

Numerator Metabolite

Structure of glycolithocholate
Metabolite Accession: GCST90199689
Name: glycolithocholate
Hmdb Id: HMDB00698
Super Pathway: NA
Sub Pathway: NA
Inchikey: XBSQTYHEGZTYJE

Denominator Metabolite

Metabolite Accession: GCST90200602
Name: NA
Hmdb Id: NA
Super Pathway: NA
Sub Pathway: NA
Inchikey: NA

Associated Genomic Regions

Region: rs62129966

Click a 'Plot' button in the tables to the right to view a locus plot here.

Clumped rQTL variant

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SNP Summary

Chr:
19
Beta (Ratio):
0.279
Position:
48374950
SE (Ratio):
0.032
Effect Allele:
A
Z-score (Ratio):
8.717
Reference Allele:
C
-log10(P):
-40.393
MAF:
0.166
Beta (Num):
0.110
Novel Locus:
Yes ✔️
SE (Num):
0.022
Beta (Den):
-0.169
SE (Den):
0.027
No CNV overlap
rQTL cluster:
7
Reaction Distance:
NA
Closest Genes:
SULT2A1 TPRX2P CRX TPRX1 SEPW1

LLM Analysis

Not available.

Downloads

Download the full rQTL summary statistics file for this metabolite ratio. Data contains the loci listed here. For each SNP (chromosome, effect_allele, reference_allele, pos_name, position) these columns contain the summary statistics of the ratio (beta, pgain, pval, se, z), the numerator metabolite (beta_1, pval_1, n_iids_1, effect_allele_frequency_1, se_1, z_1) and the denominator metabolite (beta_2, pval_2, n_iids_2, effect_allele_frequency_2, se_2, z_2)

Download rQTL Data