cis-4-decenoylcarnitine (c10:1) to glutamine conjugate of c6h10o2 (1)*

Numerator Metabolite

Structure of cis-4-decenoylcarnitine (c10:1)
Metabolite Accession: GCST90199880
Name: cis-4-decenoylcarnitine (c10:1)
Hmdb Id: HMDB0013205
Super Pathway: NA
Sub Pathway: NA
Inchikey: GOOOCIIXFLVRAG

Denominator Metabolite

Metabolite Accession: GCST90200176
Name: glutamine conjugate of c6h10o2 (1)*
Hmdb Id: NA
Super Pathway: NA
Sub Pathway: NA
Inchikey: NA

Associated Genomic Regions

Region: rs11161468

Click a 'Plot' button in the tables to the right to view a locus plot here.

Clumped rQTL variant

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SNP Summary

Chr:
1
Beta (Ratio):
-0.525
Position:
76192582
SE (Ratio):
0.019
Effect Allele:
T
Z-score (Ratio):
-27.421
Reference Allele:
C
-log10(P):
-379.494
MAF:
0.308
Beta (Num):
-0.391
Novel Locus:
No
SE (Num):
0.016
Beta (Den):
0.135
SE (Den):
0.016
No CNV overlap
rQTL cluster:
161
Reaction Distance:
NA
Closest Genes:
ACADM RABGGTB MSH4 SLC44A5 ASB17

LLM Analysis

Numerator Metabolite Explanation:

Fatty acid beta-oxidation.4[1], 5[2]

Denominator Metabolite Explanation:

Xenobiotic metabolism, Glutamine conjugation.6[1]

Ratio Explanation:

The ratio likely reflects ACADM enzyme efficiency; an increase suggests impaired function, causing accumulation of the C10:1 substrate relative to downstream products.7[1]

Ratio Evidence:

reaction where the ratio is shared through a pathway

Gene Ratio Phenotype Relationship:

No phenotype association was provided; however, the strong genetic link to ACADM suggests the ratio is relevant to medium-chain acyl-CoA dehydrogenase deficiency (MCADD).7[1]

Phenotype Driver:

none

Downloads

Download the full rQTL summary statistics file for this metabolite ratio. Data contains the loci listed here. For each SNP (chromosome, effect_allele, reference_allele, pos_name, position) these columns contain the summary statistics of the ratio (beta, pgain, pval, se, z), the numerator metabolite (beta_1, pval_1, n_iids_1, effect_allele_frequency_1, se_1, z_1) and the denominator metabolite (beta_2, pval_2, n_iids_2, effect_allele_frequency_2, se_2, z_2)

Download rQTL Data