dodecenedioate (c12:1-dc)* to glutamine conjugate of c7h12o2*

Numerator Metabolite

Structure of dodecenedioate (c12:1-dc)*
Metabolite Accession: GCST90200159
Name: dodecenedioate (c12:1-dc)*
Hmdb Id: HMDB0000933
Super Pathway: NA
Sub Pathway: NA
Inchikey: MAZWDMBCPDUFDJ

Denominator Metabolite

Metabolite Accession: GCST90200167
Name: glutamine conjugate of c7h12o2*
Hmdb Id: NA
Super Pathway: NA
Sub Pathway: NA
Inchikey: NA

Associated Genomic Regions

Region: rs61741519

Click a 'Plot' button in the tables to the right to view a locus plot here.

Clumped rQTL variant

Loading Ratio Plot...

Loading Numerator Plot...

Loading Denominator Plot...

SNP Summary

Chr:
1
Beta (Ratio):
-0.223
Position:
47325357
SE (Ratio):
0.025
Effect Allele:
G
Z-score (Ratio):
-9.085
Reference Allele:
A
-log10(P):
-43.710
MAF:
0.113
Beta (Num):
-0.148
Novel Locus:
No
SE (Num):
0.023
Beta (Den):
0.076
SE (Den):
0.024
No CNV overlap
rQTL cluster:
163
Reaction Distance:
NA
Closest Genes:
CYP4B1 CYP4A11 CYP4X1 EFCAB14 ATPAF1

Region: rs7556201

Click a 'Plot' button in the tables to the right to view a locus plot here.

Clumped rQTL variant

Loading Ratio Plot...

Loading Numerator Plot...

Loading Denominator Plot...

SNP Summary

Chr:
1
Beta (Ratio):
-0.159
Position:
76180586
SE (Ratio):
0.016
Effect Allele:
C
Z-score (Ratio):
-9.688
Reference Allele:
T
-log10(P):
-49.437
MAF:
0.336
Beta (Num):
-0.048
Novel Locus:
No
SE (Num):
0.016
Beta (Den):
0.111
SE (Den):
0.016
No CNV overlap
rQTL cluster:
161
Reaction Distance:
NA
Closest Genes:
ACADM RABGGTB MSH4 SLC44A5 ASB17

LLM Analysis

Numerator Metabolite Explanation:

Fatty acid omega-oxidation.

Denominator Metabolite Explanation:

Glutamine conjugation, detoxification pathway.7[1], 8[2]

Ratio Explanation:

The ratio likely indicates impaired beta-oxidation (via ACADM), shunting medium-chain fatty acids towards omega-oxidation (numerator) and conjugation for excretion (denominator).9[1], 10[2]

Ratio Evidence:

metabolites related through biology

Gene Ratio Phenotype Relationship:

No associated phenotype was provided, so a causal link cannot be established. However, altered ACADM function can cause Medium-Chain Acyl-CoA Dehydrogenase Deficiency (MCADD).10[1], 11[2], 12[3], 13[4]

Phenotype Driver:

none

Downloads

Download the full rQTL summary statistics file for this metabolite ratio. Data contains the loci listed here. For each SNP (chromosome, effect_allele, reference_allele, pos_name, position) these columns contain the summary statistics of the ratio (beta, pgain, pval, se, z), the numerator metabolite (beta_1, pval_1, n_iids_1, effect_allele_frequency_1, se_1, z_1) and the denominator metabolite (beta_2, pval_2, n_iids_2, effect_allele_frequency_2, se_2, z_2)

Download rQTL Data