3-hydroxydecanoylcarnitine to nonanoylcarnitine (c9)

Numerator Metabolite

Structure of 3-hydroxydecanoylcarnitine
Metabolite Accession: GCST90200246
Name: 3-hydroxydecanoylcarnitine
Hmdb Id: HMDB0061636
Super Pathway: NA
Sub Pathway: NA
Inchikey: VCRSQDIROUELAR

Denominator Metabolite

Structure of nonanoylcarnitine (c9)
Metabolite Accession: GCST90200031
Name: nonanoylcarnitine (c9)
Hmdb Id: HMDB0013288
Super Pathway: NA
Sub Pathway: NA
Inchikey: MPSPNFAQQQMFLK

Associated Genomic Regions

Region: rs4949674

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Clumped rQTL variant

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SNP Summary

Chr:
1
Beta (Ratio):
0.360
Position:
76213715
SE (Ratio):
0.015
Effect Allele:
A
Z-score (Ratio):
23.988
Reference Allele:
C
-log10(P):
-291.122
MAF:
0.308
Beta (Num):
-0.019
Novel Locus:
No
SE (Num):
0.016
Beta (Den):
-0.379
SE (Den):
0.016
No CNV overlap
rQTL cluster:
161
Reaction Distance:
NA
Closest Genes:
ACADM RABGGTB MSH4 SLC44A5 ASB17

Region: rs17843966

Click a 'Plot' button in the tables to the right to view a locus plot here.

Clumped rQTL variant

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SNP Summary

Chr:
4
Beta (Ratio):
0.242
Position:
159629814
SE (Ratio):
0.016
Effect Allele:
C
Z-score (Ratio):
15.061
Reference Allele:
A
-log10(P):
-116.355
MAF:
0.264
Beta (Num):
0.040
Novel Locus:
No
SE (Num):
0.017
Beta (Den):
-0.202
SE (Den):
0.018
No CNV overlap
rQTL cluster:
118
Reaction Distance:
NA
Closest Genes:
ETFDH PPID C4orf46 RXFP1 FNIP2

LLM Analysis

Numerator Metabolite Explanation:

Fatty acid beta-oxidation.3[1]

Denominator Metabolite Explanation:

Fatty acid beta-oxidation.4[1], 5[2]

Ratio Explanation:

This ratio reflects altered medium-chain fatty acid oxidation.6[1], 4[2] Reduced ACADM function can lead to accumulation of substrates and their byproducts, affecting this ratio.6[3]

Ratio Evidence:

reaction where the ratio is shared through a pathway

Gene Ratio Phenotype Relationship:

none

Phenotype Driver:

none

Downloads

Download the full rQTL summary statistics file for this metabolite ratio. Data contains the loci listed here. For each SNP (chromosome, effect_allele, reference_allele, pos_name, position) these columns contain the summary statistics of the ratio (beta, pgain, pval, se, z), the numerator metabolite (beta_1, pval_1, n_iids_1, effect_allele_frequency_1, se_1, z_1) and the denominator metabolite (beta_2, pval_2, n_iids_2, effect_allele_frequency_2, se_2, z_2)

Download rQTL Data