metabolonic lactone sulfate to 5alpha-pregnan-3beta,20alpha-diol monosulfate (2)

Numerator Metabolite

Metabolite Accession: GCST90200257
Name: metabolonic lactone sulfate
Hmdb Id: NA
Super Pathway: NA
Sub Pathway: NA
Inchikey: NA

Denominator Metabolite

Metabolite Accession: GCST90199854
Name: 5alpha-pregnan-3beta,20alpha-diol monosulfate (2)
Hmdb Id: NA
Super Pathway: NA
Sub Pathway: NA
Inchikey: NA

Associated Genomic Regions

Region: rs62129966

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Clumped rQTL variant

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SNP Summary

Chr:
19
Beta (Ratio):
-0.324
Position:
48374950
SE (Ratio):
0.030
Effect Allele:
A
Z-score (Ratio):
-10.860
Reference Allele:
C
-log10(P):
-61.584
MAF:
0.161
Beta (Num):
-0.161
Novel Locus:
No
SE (Num):
0.021
Beta (Den):
0.163
SE (Den):
0.021
No CNV overlap
rQTL cluster:
7
Reaction Distance:
NA
Closest Genes:
SULT2A1 TPRX2P CRX TPRX1 SEPW1

LLM Analysis

Numerator Metabolite Explanation:

Steroid metabolism.3[1]

Denominator Metabolite Explanation:

Pregnane steroid biosynthesis.4[1], 5[2]

Ratio Explanation:

The ratio reflects competitive sulfation by SULT2A1, where an increase indicates a shift in substrate preference or availability between the precursors of the two metabolites.

Ratio Evidence:

metabolites related through biology

Gene Ratio Phenotype Relationship:

Genetic variation in SULT2A1 alters its sulfation activity on steroids and bile acids, affecting the ratio and modifying bile composition.6[1], 7[2], 8[3] This dysregulation is linked to cholelithiasis and cholecystitis.8[4], 9[5], 10[6]

Phenotype Driver:

Gene-centric:SULT2A1

Downloads

Download the full rQTL summary statistics file for this metabolite ratio. Data contains the loci listed here. For each SNP (chromosome, effect_allele, reference_allele, pos_name, position) these columns contain the summary statistics of the ratio (beta, pgain, pval, se, z), the numerator metabolite (beta_1, pval_1, n_iids_1, effect_allele_frequency_1, se_1, z_1) and the denominator metabolite (beta_2, pval_2, n_iids_2, effect_allele_frequency_2, se_2, z_2)

Download rQTL Data