caproate (6:0) to x-12101

Numerator Metabolite

Structure of caproate (6:0)
Metabolite Accession: GCST90200450
Name: caproate (6:0)
Hmdb Id: HMDB0000535
Super Pathway: NA
Sub Pathway: NA
Inchikey: FUZZWVXGSFPDMH

Denominator Metabolite

Metabolite Accession: GCST90200490
Name: NA
Hmdb Id: NA
Super Pathway: NA
Sub Pathway: NA
Inchikey: NA

Associated Genomic Regions

Region: rs4646961

Click a 'Plot' button in the tables to the right to view a locus plot here.

Clumped rQTL variant

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SNP Summary

Chr:
1
Beta (Ratio):
-0.358
Position:
76217169
SE (Ratio):
0.023
Effect Allele:
A
Z-score (Ratio):
-15.600
Reference Allele:
G
-log10(P):
-124.656
MAF:
0.308
Beta (Num):
-0.185
Novel Locus:
No
SE (Num):
0.017
Beta (Den):
0.173
SE (Den):
0.016
No CNV overlap
rQTL cluster:
161
Reaction Distance:
NA
Closest Genes:
ACADM RABGGTB MSH4 SLC44A5 ASB17

LLM Analysis

Not available.

Downloads

Download the full rQTL summary statistics file for this metabolite ratio. Data contains the loci listed here. For each SNP (chromosome, effect_allele, reference_allele, pos_name, position) these columns contain the summary statistics of the ratio (beta, pgain, pval, se, z), the numerator metabolite (beta_1, pval_1, n_iids_1, effect_allele_frequency_1, se_1, z_1) and the denominator metabolite (beta_2, pval_2, n_iids_2, effect_allele_frequency_2, se_2, z_2)

Download rQTL Data