x-21319 to x-18921

Numerator Metabolite

Metabolite Accession: GCST90200564
Name: NA
Hmdb Id: NA
Super Pathway: NA
Sub Pathway: NA
Inchikey: NA

Denominator Metabolite

Metabolite Accession: GCST90200570
Name: NA
Hmdb Id: NA
Super Pathway: NA
Sub Pathway: NA
Inchikey: NA

Associated Genomic Regions

Region: rs7524467

Click a 'Plot' button in the tables to the right to view a locus plot here.

Clumped rQTL variant

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SNP Summary

Chr:
1
Beta (Ratio):
0.189
Position:
76194054
SE (Ratio):
0.013
Effect Allele:
G
Z-score (Ratio):
14.137
Reference Allele:
C
-log10(P):
-102.810
MAF:
0.308
Beta (Num):
0.017
Novel Locus:
No
SE (Num):
0.017
Beta (Den):
-0.172
SE (Den):
0.016
No CNV overlap
rQTL cluster:
161
Reaction Distance:
NA
Closest Genes:
ACADM RABGGTB MSH4 SLC44A5 ASB17

Region: rs28415528

Click a 'Plot' button in the tables to the right to view a locus plot here.

Clumped rQTL variant

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SNP Summary

Chr:
1
Beta (Ratio):
0.381
Position:
151879761
SE (Ratio):
0.013
Effect Allele:
A
Z-score (Ratio):
28.754
Reference Allele:
G
-log10(P):
-416.992
MAF:
0.317
Beta (Num):
-0.022
Novel Locus:
No
SE (Num):
0.017
Beta (Den):
-0.404
SE (Den):
0.016
No CNV overlap
rQTL cluster:
155
Reaction Distance:
NA
Closest Genes:
THEM4 THEM5 C2CD4D RORC S100A10

LLM Analysis

Not available.

Downloads

Download the full rQTL summary statistics file for this metabolite ratio. Data contains the loci listed here. For each SNP (chromosome, effect_allele, reference_allele, pos_name, position) these columns contain the summary statistics of the ratio (beta, pgain, pval, se, z), the numerator metabolite (beta_1, pval_1, n_iids_1, effect_allele_frequency_1, se_1, z_1) and the denominator metabolite (beta_2, pval_2, n_iids_2, effect_allele_frequency_2, se_2, z_2)

Download rQTL Data