x-24546 to x-21470

Numerator Metabolite

Metabolite Accession: GCST90200630
Name: NA
Hmdb Id: NA
Super Pathway: NA
Sub Pathway: NA
Inchikey: NA

Denominator Metabolite

Metabolite Accession: GCST90200590
Name: NA
Hmdb Id: NA
Super Pathway: NA
Sub Pathway: NA
Inchikey: NA

Associated Genomic Regions

Region: rs11572168

Click a 'Plot' button in the tables to the right to view a locus plot here.

Clumped rQTL variant

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SNP Summary

Chr:
10
Beta (Ratio):
0.238
Position:
96802172
SE (Ratio):
0.022
Effect Allele:
T
Z-score (Ratio):
10.614
Reference Allele:
A
-log10(P):
-58.927
MAF:
0.124
Beta (Num):
0.199
Novel Locus:
No
SE (Num):
0.025
Beta (Den):
-0.039
SE (Den):
0.025
No CNV overlap
rQTL cluster:
70
Reaction Distance:
NA
Closest Genes:
CYP2C8 CYP2C9 C10orf129 CYP2C19 PDLIM1

Region: rs148982377

Click a 'Plot' button in the tables to the right to view a locus plot here.

Clumped rQTL variant

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SNP Summary

Chr:
7
Beta (Ratio):
-0.433
Position:
99075038
SE (Ratio):
0.040
Effect Allele:
C
Z-score (Ratio):
-10.880
Reference Allele:
T
-log10(P):
-61.804
MAF:
0.034
Beta (Num):
-0.160
Novel Locus:
Yes ✔️
SE (Num):
0.045
Beta (Den):
0.274
SE (Den):
0.043
No CNV overlap
rQTL cluster:
90
Reaction Distance:
NA
Closest Genes:
ZNF789 ZNF394 ATP5J2 ATP5J2-PTCD1 PTCD1

LLM Analysis

Not available.

Downloads

Download the full rQTL summary statistics file for this metabolite ratio. Data contains the loci listed here. For each SNP (chromosome, effect_allele, reference_allele, pos_name, position) these columns contain the summary statistics of the ratio (beta, pgain, pval, se, z), the numerator metabolite (beta_1, pval_1, n_iids_1, effect_allele_frequency_1, se_1, z_1) and the denominator metabolite (beta_2, pval_2, n_iids_2, effect_allele_frequency_2, se_2, z_2)

Download rQTL Data