cis 3,4-methyleneheptanoate to x-11478

Numerator Metabolite

Metabolite Accession: GCST90200248
Name: cis-3,4-methyleneheptanoate
Hmdb Id: NA
Super Pathway: NA
Sub Pathway: NA
Inchikey: NA

Denominator Metabolite

Metabolite Accession: GCST90200463
Name: NA
Hmdb Id: NA
Super Pathway: NA
Sub Pathway: NA
Inchikey: NA

Associated Genomic Regions

Region: rs11161620

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Clumped rQTL variant

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SNP Summary

Chr:
1
Beta (Ratio):
0.095
Position:
76255228
SE (Ratio):
0.010
Effect Allele:
A
Z-score (Ratio):
9.658
Reference Allele:
G
-log10(P):
-49.140
MAF:
0.266
Beta (Num):
-0.003
Novel Locus:
Yes ✔️
SE (Num):
0.017
Beta (Den):
-0.098
SE (Den):
0.017
No CNV overlap
rQTL cluster:
161
Reaction Distance:
NA
Closest Genes:
RABGGTB ACADM MSH4 ASB17 SLC44A5

Region: rs28415528

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Clumped rQTL variant

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SNP Summary

Chr:
1
Beta (Ratio):
-0.093
Position:
151879761
SE (Ratio):
0.009
Effect Allele:
A
Z-score (Ratio):
-9.842
Reference Allele:
G
-log10(P):
-50.957
MAF:
0.318
Beta (Num):
-0.033
Novel Locus:
Yes ✔️
SE (Num):
0.017
Beta (Den):
0.060
SE (Den):
0.017
No CNV overlap
rQTL cluster:
155
Reaction Distance:
NA
Closest Genes:
THEM4 THEM5 C2CD4D RORC S100A10

Region: rs2214195

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Clumped rQTL variant

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SNP Summary

Chr:
16
Beta (Ratio):
0.142
Position:
20499397
SE (Ratio):
0.011
Effect Allele:
C
Z-score (Ratio):
12.933
Reference Allele:
A
-log10(P):
-86.424
MAF:
0.194
Beta (Num):
-0.066
Novel Locus:
No
SE (Num):
0.019
Beta (Den):
-0.208
SE (Den):
0.019
No CNV overlap
rQTL cluster:
31
Reaction Distance:
NA
Closest Genes:
AC137056.1 ACSM2A ACSM5 ACSM2B PDILT

Region: rs662138

Click a 'Plot' button in the tables to the right to view a locus plot here.

Clumped rQTL variant

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SNP Summary

Chr:
6
Beta (Ratio):
-0.143
Position:
160564476
SE (Ratio):
0.012
Effect Allele:
G
Z-score (Ratio):
-12.410
Reference Allele:
C
-log10(P):
-79.760
MAF:
0.175
Beta (Num):
-0.140
Novel Locus:
No
SE (Num):
0.020
Beta (Den):
0.003
SE (Den):
0.020
No CNV overlap
rQTL cluster:
97
Reaction Distance:
NA
Closest Genes:
SLC22A1 SLC22A2 IGF2R SLC22A3 MAS1

LLM Analysis

Not available.

Downloads

Download the full rQTL summary statistics file for this metabolite ratio. Data contains the loci listed here. For each SNP (chromosome, effect_allele, reference_allele, pos_name, position) these columns contain the summary statistics of the ratio (beta, pgain, pval, se, z), the numerator metabolite (beta_1, pval_1, n_iids_1, effect_allele_frequency_1, se_1, z_1) and the denominator metabolite (beta_2, pval_2, n_iids_2, effect_allele_frequency_2, se_2, z_2)

Download rQTL Data