cis 3,4-methyleneheptanoate to x-18921

Numerator Metabolite

Metabolite Accession: GCST90200248
Name: cis-3,4-methyleneheptanoate
Hmdb Id: NA
Super Pathway: NA
Sub Pathway: NA
Inchikey: NA

Denominator Metabolite

Metabolite Accession: GCST90200570
Name: NA
Hmdb Id: NA
Super Pathway: NA
Sub Pathway: NA
Inchikey: NA

Associated Genomic Regions

Region: rs7541058

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Clumped rQTL variant

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SNP Summary

Chr:
1
Beta (Ratio):
0.173
Position:
76199817
SE (Ratio):
0.012
Effect Allele:
T
Z-score (Ratio):
13.888
Reference Allele:
C
-log10(P):
-99.302
MAF:
0.338
Beta (Num):
0.008
Novel Locus:
No
SE (Num):
0.016
Beta (Den):
-0.165
SE (Den):
0.016
No CNV overlap
rQTL cluster:
161
Reaction Distance:
NA
Closest Genes:
ACADM RABGGTB MSH4 SLC44A5 ASB17

Region: rs28415528

Click a 'Plot' button in the tables to the right to view a locus plot here.

Clumped rQTL variant

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SNP Summary

Chr:
1
Beta (Ratio):
0.371
Position:
151879761
SE (Ratio):
0.013
Effect Allele:
A
Z-score (Ratio):
29.420
Reference Allele:
G
-log10(P):
-436.374
MAF:
0.318
Beta (Num):
-0.033
Novel Locus:
No
SE (Num):
0.017
Beta (Den):
-0.404
SE (Den):
0.016
No CNV overlap
rQTL cluster:
155
Reaction Distance:
NA
Closest Genes:
THEM4 THEM5 C2CD4D RORC S100A10

Region: rs662138

Click a 'Plot' button in the tables to the right to view a locus plot here.

Clumped rQTL variant

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SNP Summary

Chr:
6
Beta (Ratio):
-0.155
Position:
160564476
SE (Ratio):
0.016
Effect Allele:
G
Z-score (Ratio):
-9.872
Reference Allele:
C
-log10(P):
-51.254
MAF:
0.175
Beta (Num):
-0.140
Novel Locus:
No
SE (Num):
0.020
Beta (Den):
0.014
SE (Den):
0.020
No CNV overlap
rQTL cluster:
97
Reaction Distance:
NA
Closest Genes:
SLC22A1 SLC22A2 IGF2R SLC22A3 MAS1

LLM Analysis

Not available.

Downloads

Download the full rQTL summary statistics file for this metabolite ratio. Data contains the loci listed here. For each SNP (chromosome, effect_allele, reference_allele, pos_name, position) these columns contain the summary statistics of the ratio (beta, pgain, pval, se, z), the numerator metabolite (beta_1, pval_1, n_iids_1, effect_allele_frequency_1, se_1, z_1) and the denominator metabolite (beta_2, pval_2, n_iids_2, effect_allele_frequency_2, se_2, z_2)

Download rQTL Data