x-18921 to linolenoylcarnitine (c18:3)*

Numerator Metabolite

Metabolite Accession: GCST90200570
Name: NA
Hmdb Id: NA
Super Pathway: NA
Sub Pathway: NA
Inchikey: NA

Denominator Metabolite

Structure of linolenoylcarnitine (c18:3)*
Metabolite Accession: GCST90200132
Name: linolenoylcarnitine (c18:3)*
Hmdb Id: HMDB0006469
Super Pathway: NA
Sub Pathway: NA
Inchikey: MJLXQSQYKZWZCB

Associated Genomic Regions

Region: rs2185152

Click a 'Plot' button in the tables to the right to view a locus plot here.

Clumped rQTL variant

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SNP Summary

Chr:
1
Beta (Ratio):
-0.194
Position:
76224010
SE (Ratio):
0.016
Effect Allele:
T
Z-score (Ratio):
-12.249
Reference Allele:
C
-log10(P):
-77.752
MAF:
0.308
Beta (Num):
-0.173
Novel Locus:
No
SE (Num):
0.016
Beta (Den):
0.021
SE (Den):
0.016
No CNV overlap
rQTL cluster:
161
Reaction Distance:
NA
Closest Genes:
ACADM RABGGTB MSH4 SLC44A5 ASB17

Region: rs28415528

Click a 'Plot' button in the tables to the right to view a locus plot here.

Clumped rQTL variant

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SNP Summary

Chr:
1
Beta (Ratio):
-0.436
Position:
151879761
SE (Ratio):
0.016
Effect Allele:
A
Z-score (Ratio):
-27.781
Reference Allele:
G
-log10(P):
-389.451
MAF:
0.317
Beta (Num):
-0.404
Novel Locus:
No
SE (Num):
0.016
Beta (Den):
0.032
SE (Den):
0.016
No CNV overlap
rQTL cluster:
155
Reaction Distance:
NA
Closest Genes:
THEM4 THEM5 C2CD4D RORC S100A10

Region: rs272855

Click a 'Plot' button in the tables to the right to view a locus plot here.

Clumped rQTL variant

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SNP Summary

Chr:
5
Beta (Ratio):
-0.151
Position:
131687175
SE (Ratio):
0.016
Effect Allele:
C
Z-score (Ratio):
-9.319
Reference Allele:
T
-log10(P):
-45.895
MAF:
0.294
Beta (Num):
-0.043
Novel Locus:
No
SE (Num):
0.017
Beta (Den):
0.108
SE (Den):
0.016
No CNV overlap
rQTL cluster:
115
Reaction Distance:
NA
Closest Genes:
SLC22A4 SLC22A5 P4HA2 C5orf56 PDLIM4

LLM Analysis

Not available.

Downloads

Download the full rQTL summary statistics file for this metabolite ratio. Data contains the loci listed here. For each SNP (chromosome, effect_allele, reference_allele, pos_name, position) these columns contain the summary statistics of the ratio (beta, pgain, pval, se, z), the numerator metabolite (beta_1, pval_1, n_iids_1, effect_allele_frequency_1, se_1, z_1) and the denominator metabolite (beta_2, pval_2, n_iids_2, effect_allele_frequency_2, se_2, z_2)

Download rQTL Data