n6-methyllysine to x-12112

Numerator Metabolite

Structure of n6-methyllysine
Metabolite Accession: GCST90200689
Name: n6-methyllysine
Hmdb Id: HMDB0002038
Super Pathway: NA
Sub Pathway: NA
Inchikey: PQNASZJZHFPQLE

Denominator Metabolite

Metabolite Accession: GCST90200708
Name: NA
Hmdb Id: NA
Super Pathway: NA
Sub Pathway: NA
Inchikey: NA

Associated Genomic Regions

Region: rs4881413

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Clumped rQTL variant

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SNP Summary

Chr:
10
Beta (Ratio):
-0.161
Position:
5258450
SE (Ratio):
0.011
Effect Allele:
T
Z-score (Ratio):
-14.396
Reference Allele:
G
-log10(P):
-106.513
MAF:
0.150
Beta (Num):
0.008
Novel Locus:
No
SE (Num):
0.022
Beta (Den):
0.169
SE (Den):
0.022
No CNV overlap
rQTL cluster:
217
Reaction Distance:
NA
Closest Genes:
AKR1C4 AKR1CL1 AKR1C3 UCN3 TUBAL3

Region: rs2151901

Click a 'Plot' button in the tables to the right to view a locus plot here.

Clumped rQTL variant

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SNP Summary

Chr:
10
Beta (Ratio):
-0.160
Position:
5262965
SE (Ratio):
0.011
Effect Allele:
C
Z-score (Ratio):
-14.284
Reference Allele:
A
-log10(P):
-104.911
MAF:
0.150
Beta (Num):
0.009
Novel Locus:
No
SE (Num):
0.022
Beta (Den):
0.169
SE (Den):
0.022
No CNV overlap
rQTL cluster:
285
Reaction Distance:
NA
Closest Genes:
AKR1C4 AKR1CL1 AKR1C3 UCN3 TUBAL3

Region: rs17134724

Click a 'Plot' button in the tables to the right to view a locus plot here.

Clumped rQTL variant

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SNP Summary

Chr:
10
Beta (Ratio):
-0.163
Position:
5318512
SE (Ratio):
0.011
Effect Allele:
A
Z-score (Ratio):
-14.891
Reference Allele:
G
-log10(P):
-113.809
MAF:
0.157
Beta (Num):
-0.009
Novel Locus:
No
SE (Num):
0.021
Beta (Den):
0.154
SE (Den):
0.021
No CNV overlap
rQTL cluster:
76
Reaction Distance:
NA
Closest Genes:
AKR1C4 AKR1CL1 UCN3 TUBAL3 NET1

Region: rs662138

Click a 'Plot' button in the tables to the right to view a locus plot here.

Clumped rQTL variant

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SNP Summary

Chr:
6
Beta (Ratio):
0.158
Position:
160564476
SE (Ratio):
0.010
Effect Allele:
G
Z-score (Ratio):
15.081
Reference Allele:
C
-log10(P):
-116.657
MAF:
0.175
Beta (Num):
0.036
Novel Locus:
Yes ✔️
SE (Num):
0.020
Beta (Den):
-0.122
SE (Den):
0.020
No CNV overlap
rQTL cluster:
97
Reaction Distance:
NA
Closest Genes:
SLC22A1 SLC22A2 IGF2R SLC22A3 MAS1

LLM Analysis

Not available.

Downloads

Download the full rQTL summary statistics file for this metabolite ratio. Data contains the loci listed here. For each SNP (chromosome, effect_allele, reference_allele, pos_name, position) these columns contain the summary statistics of the ratio (beta, pgain, pval, se, z), the numerator metabolite (beta_1, pval_1, n_iids_1, effect_allele_frequency_1, se_1, z_1) and the denominator metabolite (beta_2, pval_2, n_iids_2, effect_allele_frequency_2, se_2, z_2)

Download rQTL Data